PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 404737
Common NameSELMODRAFT_404737
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family AP2
Protein Properties Length: 450aa    MW: 49538.3 Da    PI: 10.8778
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
404737genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.51.2e-11327388156
     AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.......krkrfslgkfgtaeeAakaaiaarkklege 56 
             s y GV+++k+  rW+A+I+++++ +       k+k++++g+  t+e Aa+ +++a  k++ge
  404737 327 SSYVGVSFYKRVERWEAHICEFVN-NltiravdKNKQIYIGSSSTPEAAARIYDRAYIKFRGE 388
             679***************999544.3355569888*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.33E-8327395IPR016177DNA-binding domain
CDDcd000181.32E-11327396No hitNo description
PfamPF008472.3E-5327388IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-7328394IPR001471AP2/ERF domain
SMARTSM003802.4E-7328400IPR001471AP2/ERF domain
PROSITE profilePS5103211.838328409IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MEAVGSSAVD GKFPCFLRVF GKFQTFVTFR SPNHGKIMPR VNPFRSVTVA AETAAPLQTQ  60
PSRRSSPTGV LLSPCSSMEL LAVQVLAMGF RCQDTTVKGT RCRRSTSRKA RSSPWPSHHL  120
LSARAQKVLE VPPVDPRLLA AMDGAEHDPV LAPPAAPSRA HAAAFILPPV APAVVRAPRT  180
KRRRLAPLSS AMATVESQSS PSSSLAAESE NKEDGSEEPA SFWSSTDGNG ERAADDHRVI  240
KEEKKPFSMA TWATPGMRTT SSSSRRKRSS SSSATERTTT IKPSSQSSSS KCSKKKTAVA  300
PKGLEEEASK RKRTPPKSAR RYTAKSSSYV GVSFYKRVER WEAHICEFVN NLTIRAVDKN  360
KQIYIGSSST PEAAARIYDR AYIKFRGENC PNFPYSDYVH EMPQWINLPG QDFIKMLRNM  420
SRGDSLLWLT PEHLVRTRTA SKRSSKYKN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180184KRRRL
2293312KKKTAVAPKGLEEEASKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002962727.10.0hypothetical protein SELMODRAFT_404737
TrEMBLD8QW850.0D8QW85_SELML; Putative uncharacterized protein
STRINGEFJ361900.0(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39250.11e-14AP2 family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]