PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 404338
Common NameSELMODRAFT_404338
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ERF
Protein Properties Length: 278aa    MW: 31917.5 Da    PI: 10.9614
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
404338genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.83.1e-09114154451
     AP2   4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
             +GV++  k+ +W + I++      +k+++lg+  t+e+Aa ++++a+ 
  404338 114 RGVYF--KNMKWQSAIKVG-----KKQVHLGTVSTKEDAAHLYDRAAY 154
             9**98..47*********4.....6********************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003800.0039114169IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-6114156IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-6119157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MRHRLLARSK KFVLNHQVFF PDSLTSDAVT GYYSMVSIRR RRLIAASAVI VKRRKKRTLR  60
PCTPETSSKS LLAKFSSPTG SGAGNGAHSR SRSAEFEIKK RTYQRKKHNT LCLRGVYFKN  120
MKWQSAIKVG KKQVHLGTVS TKEDAAHLYD RAAYMCGRVP NFELSQTVKL ELDALTWEEF  180
LDLTRKEIAN KKLRRRMEAQ QTRHGQLQQQ QQQQQDEEQE EASVSSLFER NCIHRSERLV  240
FEVGSQYIRS SVLRIESDEL IKRTLSNRNI AVNTAGT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13956RRRLIAASAVIVKRRKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024519541.11e-138ethylene-responsive transcription factor-like protein At4g13040
TrEMBLD8QV080.0D8QV08_SELML; Uncharacterized protein
STRINGEFJ363880.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP80221215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.11e-37ERF family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]