PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 402810
Common NameSELMODRAFT_402810
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ERF
Protein Properties Length: 424aa    MW: 45147.6 Da    PI: 6.5036
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
402810genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-183181256
     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
            +y+GVr+++ +gr++AeIrdp+    +  r +lg+f+tae+Aa a+++a+++++g+
  402810 31 RYRGVRRRP-WGRYAAEIRDPR----SkERRWLGTFDTAEDAAIAYDNAARAMRGA 81
            69*******.**********84....25999**********************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.9E-113180IPR001471AP2/ERF domain
CDDcd000181.59E-223188No hitNo description
PROSITE profilePS5103222.4313188IPR001471AP2/ERF domain
SMARTSM003807.2E-363194IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-213190IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.7E-303189IPR001471AP2/ERF domain
PRINTSPR003673.3E-93243IPR001471AP2/ERF domain
PRINTSPR003673.3E-95470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MKRARCDGSD GAAAAVVAKP SPLAPPAGEG RYRGVRRRPW GRYAAEIRDP RSKERRWLGT  60
FDTAEDAAIA YDNAARAMRG ARARTNFQYS SSSSSPSPSS PLASSSSSCS GCYSSGPTLS  120
QCSSNLAAPM APLPATMELV QRGPFLLPRI AQGFGQAPSQ PLQHHRWPIY DSSNMSSSPS  180
SSSNAKSSSI QPSLSTNIQS AATATTATTT TTTPIKSTGP LSPRDLCPDR HSSSSSTASF  240
ERHHDRSSSS TSSLWLQVAA QMQIQQQDHP PEQRLSPDEI CSGFIFDASN LNIPSLYEVS  300
CGLWSDTIAT TNSSSSSREF NLGTTTATPS SSCSAIQPQV TIAQQQQVAI PAASPLHDHR  360
EKEDRPNQDQ QNGGGGGGQV RNLTDEIIDD VESFSSSLLG DESTLMYDMQ LLQGLVCMQS  420
YLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-2127951079Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002966856.10.0uncharacterized protein DDB_G0271670
TrEMBLD8QN450.0D8QN45_SELML; Uncharacterized protein
STRINGEFJ386920.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.17e-07ERF family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]