PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 402258
Common NameSELMODRAFT_402258
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family NAC
Protein Properties Length: 475aa    MW: 53593.8 Da    PI: 5.5446
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
402258genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.88.5e-1031640912110
     NAM  12 eelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy.WkatgkdkevlskkgelvglkktLvfyk 110
             +  +v+ L++k +++kl++  +i+e+d+y ++P  L ++  +     yfFs+++  y     ++r+t +g  Wk++g + +++  +ge+v  k+ L f  
  402258 316 DSFLVDALRRKKARTKLDF--HIPEADVYAMHPALLLRN--SPAGTRYFFSRTKY-YFCRPARSRTTLEGWrWKQQGPSLPIKM-NGEVVAYKTYLSFVP 409
             5555566777777777777..7**************633..33346699988765.5556666666666655***********9.999**********83 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100511.981305471IPR003441NAC domain
SuperFamilySSF1019418.63E-10315413IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MSPHLVGYSV HSENLRAQNL LLRLREQGRN PVRDVSHEEA MILDTADDSY SLQAVVDGAS  60
SSYNHSPPPL PPSGFIHLSP VVCVLEPCAA CSCACCCQCP WCWTEKAAPF QVQWVLEQQQ  120
CEELDCSELF LLSQCAAAAA AAMENFTDSS PPPIDAAAED ERAAFFYSFT DGCLASMDDA  180
IVADECWNSL LDPRVLLEDE KQQWGKVAAS TPPVNVRAQE TKFQCGDGNC QEHARQENAR  240
IREFRAAFKR ALRDNLVIDV DAATDVKCEV VDDDDDFTLP GLREYHPTMD PLQRSPEVAG  300
GVESRNKRVR KTQSDDSFLV DALRRKKART KLDFHIPEAD VYAMHPALLL RNSPAGTRYF  360
FSRTKYYFCR PARSRTTLEG WRWKQQGPSL PIKMNGEVVA YKTYLSFVPL KNNASWLEML  420
LEAAEGRRSR RWARYTMEEI VLKEDRAIEL QMLKACLIPR PFRVLCRISS RQDP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD8QQ310.0D8QQ31_SELML; Uncharacterized protein
STRINGEFJ377200.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1883922
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]