PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 39814
Common NameSELMODRAFT_39806, SELMODRAFT_39814
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB_related
Protein Properties Length: 55aa    MW: 6161.08 Da    PI: 10.7296
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
39814genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.56.5e-132055340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                     ++T+ Ed  +v+a+ ++G++ W+tIar ++ gRt++ +
            39814 20 PFTAAEDAAIVRAHLLHGNK-WATIARLLP-GRTDNAI 55
                     89******************.*********.****975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-7125IPR009057Homeodomain-like
SuperFamilySSF466891.54E-16255IPR009057Homeodomain-like
PROSITE profilePS5129417.071355IPR017930Myb domain
PfamPF002494.1E-102055IPR001005SANT/Myb domain
CDDcd001676.47E-82055No hitNo description
Gene3DG3DSA:1.10.10.602.5E-142655IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 55 aa     Download sequence    Send to blast
GKSCRLRWCN QLSPQVEHRP FTAAEDAAIV RAHLLHGNKW ATIARLLPGR TDNAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-171554296B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002987933.11e-34hypothetical protein SELMODRAFT_39814, partial
RefseqXP_002994025.11e-34hypothetical protein SELMODRAFT_39806, partial
SwissprotQ9FDW16e-28MYB44_ARATH; Transcription factor MYB44
TrEMBLD8SX181e-34D8SX18_SELML; Putative uncharacterized protein (Fragment)
STRINGEFJ110073e-34(Selaginella moellendorffii)
STRINGEFJ049073e-34(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.14e-29myb domain protein r1
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]