PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 39499
Common NameSELMODRAFT_39496, SELMODRAFT_39499
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB_related
Protein Properties Length: 87aa    MW: 9985.71 Da    PI: 9.4351
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
39499genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.86.1e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+++++ +G g+W+++++  g+ R++k+c++rw +yl
            39499 14 KGPWTAEEDRKLIHYITSHGHGCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-25564IPR009057Homeodomain-like
PROSITE profilePS5129423.938965IPR017930Myb domain
SMARTSM007171.9E-141363IPR001005SANT/Myb domain
PfamPF002494.8E-171461IPR001005SANT/Myb domain
SuperFamilySSF466892.36E-221587IPR009057Homeodomain-like
CDDcd001671.08E-111661No hitNo description
PROSITE profilePS500903.886287IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.6E-76587IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MGRQPCCEKV GLKKGPWTAE EDRKLIHYIT SHGHGCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGVL TEQEEQMIID LHAVMGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-171287579B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002960429.19e-60hypothetical protein SELMODRAFT_39499, partial
RefseqXP_002967288.19e-60hypothetical protein SELMODRAFT_39496, partial
SwissprotP800731e-48MYB2_PHYPA; Myb-related protein Pp2
SwissprotQ50EX66e-49ODO1_PETHY; Protein ODORANT1
TrEMBLD8QMP59e-60D8QMP5_SELML; Putative uncharacterized protein (Fragment)
STRINGEFJ379683e-59(Selaginella moellendorffii)
STRINGEFJ318873e-59(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.12e-52myb domain protein 20
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]