PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 39143
Common NameSELMODRAFT_39143
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family bHLH
Protein Properties Length: 66aa    MW: 7682.87 Da    PI: 10.4766
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
39143genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.32.4e-171258455
           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
    HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
            hn  Er+RRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  39143 12 VHNLSERKRRDRINERMKALQELIPNS-----NKTDKASMLDEAIEYLKLLQ 58
           6*************************7.....5****************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-21563IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.241857IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.23E-131162No hitNo description
PfamPF000107.9E-151258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-191262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-171463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 66 aa     Download sequence    Send to blast
PKGSKRSRAA EVHNLSERKR RDRINERMKA LQELIPNSNK TDKASMLDEA IEYLKLLQHQ  60
LQVVCP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11621ERKRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002978656.16e-42hypothetical protein SELMODRAFT_39143, partial
SwissprotO805363e-29PIF3_ARATH; Transcription factor PIF3
TrEMBLD8S5S06e-42D8S5S0_SELML; Putative uncharacterized protein (Fragment)
STRINGEFJ201032e-41(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-30phytochrome interacting factor 3
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]