PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 38594
Common NameSELMODRAFT_38592, SELMODRAFT_38594
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family bZIP
Protein Properties Length: 70aa    MW: 8541.4 Da    PI: 9.9746
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
38594genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_159.76.1e-19967159
            XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1  1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59
            e+elkr+rrkq+NRe+ArrsRqRK++e+eeL  kv+ L++ N++Lk +l   ++   +l
   38594  9 ERELKRQRRKQSNRESARRSRQRKQKECEELSHKVEDLTQDNERLKAQLADVQEIKRQL 67
            89********************************************9998877766665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.5E-18268No hitNo description
PfamPF001706.3E-17968IPR004827Basic-leucine zipper domain
SMARTSM003381.0E-13969IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.5761170IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.5E-121267No hitNo description
CDDcd147029.83E-101462No hitNo description
PROSITE patternPS0003601631IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
SSSFKSQDER ELKRQRRKQS NRESARRSRQ RKQKECEELS HKVEDLTQDN ERLKAQLADV  60
QEIKRQLEEE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12531RRSRQRK
22532RRSRQRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002969834.22e-35G-box-binding factor 1 isoform X1
RefseqXP_002985171.22e-35G-box-binding factor 1 isoform X1
RefseqXP_024514968.12e-35G-box-binding factor 1 isoform X1
RefseqXP_024514969.12e-35G-box-binding factor 1 isoform X2
RefseqXP_024530398.13e-35G-box-binding factor 1 isoform X2
SwissprotQ501B23e-16BZP16_ARATH; bZIP transcription factor 16
TrEMBLD8RG103e-38D8RG10_SELML; Uncharacterized protein (Fragment)
STRINGEFJ136655e-39(Selaginella moellendorffii)
STRINGEFJ289585e-39(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7001767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-18basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]