PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 38502
Common NameSELMODRAFT_105485, SELMODRAFT_38502
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ERF
Protein Properties Length: 75aa    MW: 8420.54 Da    PI: 10.7693
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
38502genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.23.1e-211867255
    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
            y+GVr++  +g+WvAeIr+p++   r r +lg+f ta+eAa+a+++a+k+l+g
  38502 18 TYRGVRQRT-WGKWVAEIREPKK---RSRLWLGSFATADEAARAYDEAAKRLYG 67
           69****999.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.30E-271775No hitNo description
PROSITE profilePS5103222.4581875IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-311875IPR001471AP2/ERF domain
SMARTSM003803.7E-311875IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-211875IPR016177DNA-binding domain
PfamPF008478.0E-151867IPR001471AP2/ERF domain
PRINTSPR003676.1E-111930IPR001471AP2/ERF domain
PRINTSPR003676.1E-114157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
SKKGSMRGKG GPENASCTYR GVRQRTWGKW VAEIREPKKR SRLWLGSFAT ADEAARAYDE  60
AAKRLYGPEA HLNLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-171975663ATERF1
3gcc_A1e-171975663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145629.18e-41hypothetical protein PHAVU_007G255100g
RefseqXP_016709356.18e-41PREDICTED: dehydration-responsive element-binding protein 2F-like
RefseqXP_021847277.16e-41dehydration-responsive element-binding protein 2F
SwissprotQ10R186e-39DRE2E_ORYSJ; Dehydration-responsive element-binding protein 2E
TrEMBLD8RQK31e-47D8RQK3_SELML; Uncharacterized protein (Fragment)
STRINGEFJ224482e-48(Selaginella moellendorffii)
STRINGEFJ254632e-48(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-33ERF family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]