PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 37570
Common NameSELMODRAFT_37566, SELMODRAFT_37570
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family LBD
Protein Properties Length: 104aa    MW: 11204 Da    PI: 8.5036
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
37570genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260103.42e-322102196
  DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
             +C++C+vlr++C+++C+l+p++     +++q +++ +v+k+FG++ ++ +++a+pe++r+++++sl+yeA+ r+ +PvyGavg++++++++++q++++++l
   37570   2 SCNGCRVLRKGCSDSCALRPCLqwiegAEAQGHATVFVAKFFGRAGLMGFIAAVPENQRPALFRSLLYEACGRTVNPVYGAVGLLWSGNWHVCQAAVDTVL 102
             6*********************9999888899***************************************************************998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.391104IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-272100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDSCALR PCLQWIEGAE AQGHATVFVA KFFGRAGLMG FIAAVPENQR  60
PALFRSLLYE ACGRTVNPVY GAVGLLWSGN WHVCQAAVDT VLRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002980518.24e-72uncharacterized protein LOC9648216
RefseqXP_002984556.24e-72uncharacterized protein LOC9644611
SwissprotQ9FN112e-62LBD37_ARATH; LOB domain-containing protein 37
SwissprotQ9SZE82e-62LBD39_ARATH; LOB domain-containing protein 39
TrEMBLD8SB101e-70D8SB10_SELML; Uncharacterized protein (Fragment)
STRINGEFJ142012e-71(Selaginella moellendorffii)
STRINGEFJ181692e-71(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.17e-65LOB domain-containing protein 37
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  2. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]