PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29096
Common NameSELMODRAFT_29096, SELMODRAFT_29099
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family Dof
Protein Properties Length: 64aa    MW: 7385.19 Da    PI: 10.3484
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29096genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof61.22e-19363558
  zf-Dof  5 alkcprCdstntkfCyynnysls....qPryfCkaCrryWtkGGalrnv...PvGggrrkn 58
              +cprC+s nt+f yynn   +    qPry C++C+  Wt+GG +rnv   P Gg +r +
   29096  3 VYQCPRCQSYNTRFDYYNNEKSTgkrdQPRYACRSCKGKWTQGGKVRNVslsPTGGNKRTS 63
            679****************86533444*********************9777788888876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027016.1E-28164IPR003851Zinc finger, Dof-type
PROSITE profilePS5088415.603462IPR003851Zinc finger, Dof-type
ProDomPD0074785.0E-9661IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
DNVYQCPRCQ SYNTRFDYYN NEKSTGKRDQ PRYACRSCKG KWTQGGKVRN VSLSPTGGNK  60
RTSK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA consensus core sequence 5'-AAAG-3' also known as prolamin box (PubMed:16798940). Can activate the expression of genes encoding for the seed storage proteins glutelin, prolamin and globulin. Functions synergistically with RISBZ/BZIP58 to positively regulate quantitatively many seed storage proteins (PubMed:16798940, PubMed:19473328). Functions synergistically with RISBZ1/BZIP58 to positively regulate some metabolic enzymes, such as alanine aminotransferase and pyruvate phosphate dikinase, that are expressed in developing seeds (PubMed:16798940). Functions synergistically with RISBZ1/BZIP58 to positively regulate genes that are key players in the development of aleurone layers (PubMed:19473328). Functions synergistically with RISBZ1/BZIP58 to positively regulate the glutelin GLUD-1 gene in endosperm of developing seeds (PubMed:18980953). Can activate the expression of the bifunctional lysine-degrading enzyme, lysine ketoglutarate reductase/saccharopine dehydrogenase (LKR/SDH), one of the key regulators determining free lysine content in plants (PubMed:21037241). In germinating seeds, involved in the gibberellin-mediated activation of the alpha-amylase AMY1.1/AMY1A gene (PubMed:14500792). {ECO:0000269|PubMed:14500792, ECO:0000269|PubMed:16798940, ECO:0000269|PubMed:18980953, ECO:0000269|PubMed:19473328, ECO:0000269|PubMed:21037241}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gibberellin. {ECO:0000269|PubMed:11470159, ECO:0000269|PubMed:16798940}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024516314.12e-37uncharacterized protein LOC112341077
RefseqXP_024520303.11e-37uncharacterized protein LOC112342540
SwissprotQ6K5371e-12DOF3_ORYSJ; Dof zinc finger protein 3
TrEMBLD8STL84e-39D8STL8_SELML; Uncharacterized protein (Fragment)
STRINGEFJ081997e-40(Selaginella moellendorffii)
STRINGEFJ122267e-40(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.14e-14Dof family protein
Publications ? help Back to Top
  1. Washio K
    Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains.
    Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62
    [PMID:11470159]
  2. Washio K
    Functional dissections between GAMYB and Dof transcription factors suggest a role for protein-protein associations in the gibberellin-mediated expression of the RAmy1A gene in the rice aleurone.
    Plant Physiol., 2003. 133(2): p. 850-63
    [PMID:14500792]
  3. Yamamoto MP,Onodera Y,Touno SM,Takaiwa F
    Synergism between RPBF Dof and RISBZ1 bZIP activators in the regulation of rice seed expression genes.
    Plant Physiol., 2006. 141(4): p. 1694-707
    [PMID:16798940]
  4. Kawakatsu T,Yamamoto MP,Hirose S,Yano M,Takaiwa F
    Characterization of a new rice glutelin gene GluD-1 expressed in the starchy endosperm.
    J. Exp. Bot., 2008. 59(15): p. 4233-45
    [PMID:18980953]
  5. Kawakatsu T,Yamamoto MP,Touno SM,Yasuda H,Takaiwa F
    Compensation and interaction between RISBZ1 and RPBF during grain filling in rice.
    Plant J., 2009. 59(6): p. 908-20
    [PMID:19473328]
  6. Kawakatsu T,Takaiwa F
    Differences in transcriptional regulatory mechanisms functioning for free lysine content and seed storage protein accumulation in rice grain.
    Plant Cell Physiol., 2010. 51(12): p. 1964-74
    [PMID:21037241]
  7. Gaur VS,Singh US,Kumar A
    Transcriptional profiling and in silico analysis of Dof transcription factor gene family for understanding their regulation during seed development of rice Oryza sativa L.
    Mol. Biol. Rep., 2011. 38(4): p. 2827-48
    [PMID:21113680]
  8. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  9. Schmidt R, et al.
    SALT-RESPONSIVE ERF1 is a negative regulator of grain filling and gibberellin-mediated seedling establishment in rice.
    Mol Plant, 2014. 7(2): p. 404-21
    [PMID:24046061]
  10. Fan J, et al.
    Infection of Ustilaginoidea virens intercepts rice seed formation but activates grain-filling-related genes.
    J Integr Plant Biol, 2015. 57(6): p. 577-90
    [PMID:25319482]
  11. Sutoh K, et al.
    An N-terminal region of a Myb-like protein is involved in its intracellular localization and activation of a gibberellin-inducible proteinase gene in germinated rice seeds.
    Biosci. Biotechnol. Biochem., 2015. 79(5): p. 747-59
    [PMID:25559339]