PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28959
Common NameSELMODRAFT_28959
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family Dof
Protein Properties Length: 68aa    MW: 7912.85 Da    PI: 10.3078
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28959genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof62.48.6e-20366561
  zf-Dof  5 alkcprCdstntkfCyynnysls....qPryfCkaCrryWtkGGalrnv...PvGggrrknkks 61
              +cprC+s nt f yynn   +    qPry C++C+  Wt+GG +r+v   P Gg +rk+k+ 
   28959  3 VYQCPRCQSYNTWFDYYNNEKSTgkrdQPRYICRSCKGKWTQGGKVRDVslsPTGGNKRKSKAL 66
            679****************86533444*********************988889******9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.3E-28165IPR003851Zinc finger, Dof-type
ProDomPD0074785.0E-9164IPR003851Zinc finger, Dof-type
PROSITE profilePS5088415.109462IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
DNVYQCPRCQ SYNTWFDYYN NEKSTGKRDQ PRYICRSCKG KWTQGGKVRD VSLSPTGGNK  60
RKSKALRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024516314.14e-41uncharacterized protein LOC112341077
SwissprotQ9M1619e-12DOF41_ARATH; Dof zinc finger protein DOF4.1
TrEMBLD8S8G81e-42D8S8G8_SELML; Uncharacterized protein (Fragment)
STRINGEFJ194092e-43(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00940.14e-14Dof family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]