PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 270428
Common NameSELMODRAFT_270428
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family G2-like
Protein Properties Length: 244aa    MW: 27868.4 Da    PI: 6.7163
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
270428genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.51.4e-282987155
  G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmk....vkgLtlehvkSHLQkYRl 55
             kpr+rWtpeLHerFv+ave+LGG+e+AtPk il++m+    v+g+ + hvkSHLQkYRl
   270428 29 KPRMRWTPELHERFVRAVEELGGAENATPKCILRVMNtyssVDGVNILHVKSHLQKYRL 87
             79**********************************755558****************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.09E-152888IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-262888IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-202988IPR006447Myb domain, plants
PfamPF002496.5E-73186IPR001005SANT/Myb domain
PfamPF143791.2E-19119164IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MVPAAQSSRI SQISQQQQQP CSIISPVPKP RMRWTPELHE RFVRAVEELG GAENATPKCI  60
LRVMNTYSSV DGVNILHVKS HLQKYRLVKD LPPSPVAKQQ QSKQCSLELP SLNVETGLQI  120
TETLRLQLEV QKQLHEQLEI QRDLQKKIED HGRYLERMYN KTEEATRSCH KNSDEPSPGP  180
QEQEQRKHRQ TCDDQIHQAS GTTTSTADSF QPPLKKLKPS QEQEELQPVG DEDVDFSELW  240
KFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-182989258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-182989258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-182989258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-182989258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-182989258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-182989258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-182989258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-182989258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024524637.11e-177protein PHOSPHATE STARVATION RESPONSE 1
TrEMBLD8QZD01e-178D8QZD0_SELML; Uncharacterized protein
STRINGEFJ343861e-179(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.13e-44phosphate starvation response 1
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]