PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 26594
Common NameSELMODRAFT_26594
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ERF
Protein Properties Length: 175aa    MW: 19338.6 Da    PI: 4.8158
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
26594genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-191463255
    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
            y+G+r+++ +g+Wv+eIr+p++   ++r++lg+f t+e+Aa+a++ a+ +l+g
  26594 14 LYRGIRRRS-WGKWVSEIREPKK---KTRIWLGSFPTPEMAARAYDVAAISLKG 63
           69****887.**********854...6***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-121363IPR001471AP2/ERF domain
CDDcd000183.75E-331372No hitNo description
Gene3DG3DSA:3.30.730.109.4E-321472IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-221471IPR016177DNA-binding domain
SMARTSM003807.3E-391477IPR001471AP2/ERF domain
PROSITE profilePS5103224.0921471IPR001471AP2/ERF domain
PRINTSPR003674.3E-131526IPR001471AP2/ERF domain
PRINTSPR003674.3E-135373IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
PQQQQSDQET QHPLYRGIRR RSWGKWVSEI REPKKKTRIW LGSFPTPEMA ARAYDVAAIS  60
LKGPKAVLNF PEFAYSLPQP AMVSPKSIQQ AAAAAALAFS SCSLGTSSSS NTKASYRSSL  120
ASEGQVNYVD EDMIFNMPDV VTDMAQAMLL APPRLSQEQS DEEDESGEEA SIWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1911721173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024516708.11e-116ethylene-responsive transcription factor ERF024
TrEMBLD8RZ311e-125D8RZ31_SELML; Uncharacterized protein (Fragment)
STRINGEFJ225381e-126(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.19e-40C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]