PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 19890
Common NameSELMODRAFT_19890
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ERF
Protein Properties Length: 58aa    MW: 6497.48 Da    PI: 11.3401
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
19890genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.9e-19149355
    AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
           y+GVr+++ +g+W+AeIrdp     +   r +lg+f tae+Aa a++aa+++++g
  19890  1 YRGVRQRP-SGKWAAEIRDP-----HqgVRLWLGSFATAEKAALAYDAAARRIKG 49
           9*******.7*********7.....336************************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.4E-28157IPR001471AP2/ERF domain
PfamPF008472.5E-12149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-31157IPR001471AP2/ERF domain
PROSITE profilePS5103221.838157IPR001471AP2/ERF domain
CDDcd000181.85E-17156No hitNo description
PRINTSPR003673.0E-9112IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-21157IPR016177DNA-binding domain
PRINTSPR003673.0E-92339IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 58 aa     Download sequence    Send to blast
YRGVRQRPSG KWAAEIRDPH QGVRLWLGSF ATAEKAALAY DAAARRIKGK KAKLNFVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-20156359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-20156662ATERF1
3gcc_A4e-20156662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024539484.12e-33ethylene-responsive transcription factor 5-like
RefseqXP_024539486.12e-33ethylene-responsive transcription factor 5-like
RefseqXP_024539487.12e-33ethylene-responsive transcription factor 5-like
RefseqXP_024539488.12e-33ethylene-responsive transcription factor 5-like
RefseqXP_024539489.12e-33ethylene-responsive transcription factor 5-like
RefseqXP_024539490.12e-33ethylene-responsive transcription factor 5-like
RefseqXP_024539491.12e-33ethylene-responsive transcription factor 5-like
RefseqXP_024539492.12e-33ethylene-responsive transcription factor 5-like
RefseqXP_024545514.12e-33ethylene-responsive transcription factor 5-like
RefseqXP_024545515.12e-33ethylene-responsive transcription factor 5-like
RefseqXP_024545516.12e-33ethylene-responsive transcription factor 5-like
RefseqXP_024545517.12e-33ethylene-responsive transcription factor 5-like
RefseqXP_024545518.12e-33ethylene-responsive transcription factor 5-like
RefseqXP_024545519.12e-33ethylene-responsive transcription factor 5-like
RefseqXP_024545520.12e-33ethylene-responsive transcription factor 5-like
SwissprotP427361e-24RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLD8S5W21e-33D8S5W2_SELML; Uncharacterized protein (Fragment)
STRINGEFJ202422e-34(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.14e-14related to AP2 6
Publications ? help Back to Top
  1. Bueso E, et al.
    The lithium tolerance of the Arabidopsis cat2 mutant reveals a cross-talk between oxidative stress and ethylene.
    Plant J., 2007. 52(6): p. 1052-65
    [PMID:17931347]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Chen YC, et al.
    Root defense analysis against Fusarium oxysporum reveals new regulators to confer resistance.
    Sci Rep, 2014. 4: p. 5584
    [PMID:24998294]
  5. Deslauriers SD,Alvarez AA,Lacey RF,Binder BM,Larsen PB
    Dominant gain-of-function mutations in transmembrane domain III of ERS1 and ETR1 suggest a novel role for this domain in regulating the magnitude of ethylene response in Arabidopsis.
    New Phytol., 2015. 208(2): p. 442-55
    [PMID:25988998]
  6. Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F
    Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana.
    Plant Sci., 2015. 236: p. 37-43
    [PMID:26025519]
  7. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  8. Liu W, et al.
    Ethylene response factor AtERF72 negatively regulates Arabidopsis thaliana response to iron deficiency.
    Biochem. Biophys. Res. Commun., 2017. 491(3): p. 862-868
    [PMID:28390898]
  9. Yao Y,Chen X,Wu AM
    ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
    Plant Signal Behav, 2017. 12(6): p. e1329073
    [PMID:28537474]