PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 19741
Common NameSELMODRAFT_19741
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family C3H
Protein Properties Length: 72aa    MW: 8344.33 Da    PI: 8.1264
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
19741genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH171e-05219926
             GGGTS--TTTTT-SS-SS CS
  zf-CCCH  9 fartGtCkyGdrCkFaHg 26
             ++  G C  Gd+C+F+H+
    19741  2 YYLHGACLKGDSCQFSHS 19
             6678*************8 PP

2zf-CCCH20.77.2e-074967625
             -SGGGGTS--TTTTT-SS-S CS
  zf-CCCH  6 CrffartGtCkyGdrCkFaH 25
             C  f+++G C+yG+ C++ H
    19741 49 CT-FYQSGVCSYGSHCRYEH 67
             66.8888**********988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.09E-5119IPR000571Zinc finger, CCCH-type
SMARTSM003566.1120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.84121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4222IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-54369IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1734370IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-64567IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-54667IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-44867IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
KYYLHGACLK GDSCQFSHSF DDPSSNVRLF DPNSICSWFF LGRFSSQICT FYQSGVCSYG  60
SHCRYEHIRL SR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002979291.13e-47hypothetical protein SELMODRAFT_19741, partial
TrEMBLD8S7633e-47D8S763_SELML; Putative uncharacterized protein (Fragment)
STRINGEFJ196991e-46(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.23e-14C3H family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]