PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 19643
Common NameSELMODRAFT_414369
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family Dof
Protein Properties Length: 62aa    MW: 7166.93 Da    PI: 10.0212
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
19643genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof58.51.4e-18261355
  zf-Dof  3 ekalkcprCdstntkfCyynnysls....qPryfCkaCrryWtkGGalrnv...PvGggr 55
            ++  +cprC+s nt+f yynn   +    qPry C++C+  Wt+GG +r+v   P Gg +
   19643  2 DNVYQCPRCQSYNTRFDYYNNEKSTgkrdQPRYACRSCKGKWTQGGKVRDVslsPTGGNK 61
            67789****************86533444*********************9555556655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-9162IPR003851Zinc finger, Dof-type
PfamPF027013.8E-27262IPR003851Zinc finger, Dof-type
PROSITE profilePS5088415.389562IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 62 aa     Download sequence    Send to blast
PDNVYQCPRC QSYNTRFDYY NNEKSTGKRD QPRYACRSCK GKWTQGGKVR DVSLSPTGGN  60
KR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024516314.17e-38uncharacterized protein LOC112341077
RefseqXP_024520303.17e-38uncharacterized protein LOC112342540
TrEMBLD8RD716e-38D8RD71_SELML; Uncharacterized protein (Fragment)
TrEMBLD8RSI52e-37D8RSI5_SELML; Uncharacterized protein
TrEMBLD8STN72e-37D8STN7_SELML; Uncharacterized protein
TrEMBLD8T5502e-37D8T550_SELML; Uncharacterized protein
STRINGEFJ082004e-38(Selaginella moellendorffii)
STRINGEFJ122923e-38(Selaginella moellendorffii)
STRINGEFJ250731e-38(Selaginella moellendorffii)
STRINGEFJ250743e-38(Selaginella moellendorffii)
STRINGEFJ299701e-38(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69570.11e-13Dof family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]