PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 19636
Common NameSELMODRAFT_19636, SELMODRAFT_19637
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family Dof
Protein Properties Length: 62aa    MW: 7209.02 Da    PI: 10.0212
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
19636genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof59.95.1e-19261355
  zf-Dof  3 ekalkcprCdstntkfCyynnysls....qPryfCkaCrryWtkGGalrnv...PvGggr 55
            ++  +cprC+s nt+f yynn   +    qPry C++C+  Wt+GG +r+v   P Gg +
   19636  2 DNVYQCPRCQSYNTRFDYYNNEKSTgkrdQPRYICRSCKGKWTQGGKVRDVslsPTGGNK 61
            67789****************86533444*********************9555556655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-9162IPR003851Zinc finger, Dof-type
PfamPF027012.7E-27262IPR003851Zinc finger, Dof-type
PROSITE profilePS5088415.538562IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 62 aa     Download sequence    Send to blast
PDNVYQCPRC QSYNTRFDYY NNEKSTGKRD QPRYICRSCK GKWTQGGKVR DVSLSPTGGN  60
KR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024516314.11e-38uncharacterized protein LOC112341077
RefseqXP_024520303.11e-38uncharacterized protein LOC112342540
TrEMBLD8T5456e-38D8T545_SELML; Uncharacterized protein (Fragment)
STRINGEFJ081951e-38(Selaginella moellendorffii)
STRINGEFJ081971e-38(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69570.17e-14Dof family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]