PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 17087
Common NameSELMODRAFT_17087
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family AP2
Protein Properties Length: 174aa    MW: 19710.1 Da    PI: 10.5959
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
17087genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.21.7e-07150855
    AP2  8 wdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
           +++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  17087  1 RHRWTGRFEAHLWDnTC-RKegQTrKGRQ-GGYDAEEKAARAYDLAALKYWG 50
           5999**********333.44554536666.668888**************98 PP

2AP251.82e-1693145156
    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
            s+++GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g+
  17087  93 SRFRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRGA 145
            789***************988532...5*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.908158IPR001471AP2/ERF domain
CDDcd000189.27E-12160No hitNo description
Gene3DG3DSA:3.30.730.108.0E-10159IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-11159IPR016177DNA-binding domain
SMARTSM003803.0E-13164IPR001471AP2/ERF domain
PfamPF008472.3E-5150IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-1893154IPR016177DNA-binding domain
CDDcd000181.45E-2193154No hitNo description
PfamPF008471.6E-1093144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-1994153IPR001471AP2/ERF domain
SMARTSM003802.5E-3194158IPR001471AP2/ERF domain
PROSITE profilePS5103218.9494152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
RHRWTGRFEA HLWDNTCRKE GQTRKGRQGG YDAEEKAARA YDLAALKYWG PTTTTNFPAV  60
EYHSKLTEMK SMSRQAFVAA LRRKSSGFAR GASRFRGVTR HHQQGRWQAR IGRVAGNKDL  120
YLGTFSTEEE AAEAYDIAAI KFRGASAVTN FDMSHYDLRR ICSSPSLLLG DTAR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024541956.11e-123AP2-like ethylene-responsive transcription factor ANT
SwissprotQ1PFE11e-95AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ6PQQ34e-95AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ44e-95BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM
TrEMBLD8SCE61e-126D8SCE6_SELML; Uncharacterized protein (Fragment)
STRINGEFJ176921e-127(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.16e-93AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  3. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  4. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  5. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  6. Florez SL,Erwin RL,Maximova SN,Guiltinan MJ,Curtis WR
    Enhanced somatic embryogenesis in Theobroma cacao using the homologous BABY BOOM transcription factor.
    BMC Plant Biol., 2015. 15: p. 121
    [PMID:25976599]
  7. Lutz KA,Martin C,Khairzada S,Maliga P
    Steroid-inducible BABY BOOM system for development of fertile Arabidopsis thaliana plants after prolonged tissue culture.
    Plant Cell Rep., 2015. 34(10): p. 1849-56
    [PMID:26156330]
  8. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  9. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  10. Horstman A, et al.
    The BABY BOOM Transcription Factor Activates the LEC1-ABI3-FUS3-LEC2 Network to Induce Somatic Embryogenesis.
    Plant Physiol., 2017. 175(2): p. 848-857
    [PMID:28830937]
  11. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]
  12. Horstman A,Bemer M,Boutilier K
    A transcriptional view on somatic embryogenesis.
    Regeneration (Oxf), 2017. 4(4): p. 201-216
    [PMID:29299323]