PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 157928
Common NameSELMODRAFT_157928
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family C3H
Protein Properties Length: 321aa    MW: 34472.8 Da    PI: 4.7261
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
157928genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.91.3e-062161126
             GTS--TTTTT-SS-SS CS
  zf-CCCH 11 rtGtCkyGdrCkFaHg 26
             + G C++G++C+F H+
   157928  2 K-GDCNRGSQCNFLHS 16
             5.9************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.15118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.102.7E-4322311IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.00212258IPR001680WD40 repeat
SuperFamilySSF509781.5E-4423312IPR017986WD40-repeat-containing domain
PfamPF004000.00292758IPR001680WD40 repeat
PROSITE profilePS5029421.09429228IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.1822967IPR001680WD40 repeat
PROSITE patternPS0067804559IPR019775WD40 repeat, conserved site
PRINTSPR003209.4E-64559IPR020472G-protein beta WD-40 repeat
SMARTSM003200.3298135IPR001680WD40 repeat
SMARTSM003200.16142179IPR001680WD40 repeat
PfamPF004000.061149179IPR001680WD40 repeat
PROSITE profilePS5008211.645149188IPR001680WD40 repeat
PROSITE patternPS006780166180IPR019775WD40 repeat, conserved site
PRINTSPR003209.4E-6166180IPR020472G-protein beta WD-40 repeat
SMARTSM003201.9E-4182219IPR001680WD40 repeat
PfamPF004000.0038184218IPR001680WD40 repeat
PRINTSPR003209.4E-6206220IPR020472G-protein beta WD-40 repeat
SMARTSM0032086224271IPR001680WD40 repeat
SMARTSM0032067274311IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MKGDCNRGSQ CNFLHSYSTT TEMEMMTQLT GHTKAVKGIA LSSSLYTGGQ DKSVKVWNSD  60
DGKCTTTVPM GSEVESLLIA SGWLFVGLPN EVRAWNMQTN AQQSLDGPKG QVYALAVCED  120
ALFAGSQDGS ILAWKYNTAV NAFQPAYGLY GHAGAVVTLQ AAGGRLYSGS TDKSIRVWNI  180
ATRECLFTLH GHSNVVMSLL CWEQFLLSCS LDGYIKVWAA TPSGLEVTYT YPEDDQGDEL  240
DGALALCGTV DAQGKPVLLC SYNDNTVRLY DLPTFNERGV LFSRDEVRVL QGGPGGLVFS  300
GESSGDVKVW CWTKAISSTG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ovp_B2e-19830494416F-box/WD repeat protein 7
2ovq_B2e-19830494416F-box/WD repeat protein 7
2ovr_B2e-19830494416F-box/WD repeat protein 7
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002986293.10.0hypothetical protein SELMODRAFT_157928
SwissprotQ0DYP51e-121C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLD8SSK20.0D8SSK2_SELML; Putative uncharacterized protein
STRINGEFJ125020.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10651624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.11e-119C3H family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]