PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 129793
Common NameSELMODRAFT_129793
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family AP2
Protein Properties Length: 181aa    MW: 21080.5 Da    PI: 9.8716
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
129793genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.57.7e-141170155
     AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55
            s y+GV++++++gr++A+++d  ++n    k+ k+  l +++ +e Aa+a++ a++k++g
  129793 11 SIYRGVTRHRWTGRYEAHLWDkGTWNHtqnKKgKQGILHSYDDEEAAARAYDLAALKYWG 70
            57*******************888855555446*************************98 PP

2AP252.11.6e-16117168155
     AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
             s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  129793 117 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAATAYDMAAIEYRG 168
             89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.82E-151179IPR016177DNA-binding domain
PfamPF008472.0E-91170IPR001471AP2/ERF domain
SMARTSM003802.7E-191284IPR001471AP2/ERF domain
PROSITE profilePS5103218.1361278IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-131279IPR001471AP2/ERF domain
PRINTSPR003671.4E-61324IPR001471AP2/ERF domain
PfamPF008473.0E-12117168IPR001471AP2/ERF domain
CDDcd000187.12E-22117178No hitNo description
SuperFamilySSF541712.22E-18117178IPR016177DNA-binding domain
SMARTSM003803.2E-22118180IPR001471AP2/ERF domain
PROSITE profilePS5103218.479118176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-18118177IPR001471AP2/ERF domain
PRINTSPR003671.4E-6158178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MPPCTAGKRS SIYRGVTRHR WTGRYEAHLW DKGTWNHTQN KKGKQGILHS YDDEEAAARA  60
YDLAALKYWG PGTLINFPVT DYTRDIEEMQ NVSREEYLAS LRRQEEQRAR APSRRVSKYR  120
GVARHHHNGR WEARIGRVFG NKYLYLGTYS TQEEAATAYD MAAIEYRGLN AVTNFDLSRY  180
I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002989385.11e-134hypothetical protein SELMODRAFT_129793, partial
SwissprotQ6X5Y64e-88WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLD8T1D01e-134D8T1D0_SELML; Putative uncharacterized protein (Fragment)
STRINGEFJ094761e-133(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-77AP2 family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]