PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 118926
Common NameE2F1-1, SELMODRAFT_445661
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family E2F/DP
Protein Properties Length: 176aa    MW: 19884.6 Da    PI: 4.608
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
118926genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP76.72.3e-24158971
  E2F_TDP  9 ltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
             lt+kf++l+ ++e+g+++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+irwkg
   118926  1 LTKKFINLIDQAEDGVLDLNNAADTL---HV--QKRRIYDITNVLEGIGLIEKKLKNRIRWKG 58
             79************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.9E-15156IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-24159IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023199.3E-22158IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM013725.2E-24158IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146609.91E-4772174No hitNo description
SuperFamilySSF1440741.7E-3173174No hitNo description
PfamPF164211.7E-3275174IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
LTKKFINLID QAEDGVLDLN NAADTLHVQK RRIYDITNVL EGIGLIEKKL KNRIRWKGLG  60
LSVADSDSTG LLSSLQSEVD DLHAQEESLD EKIRAMREKL KTMCEDVSNQ QWLYVTEDDI  120
KGLPCFQNET LIAIKAPQGT TLEVPDPDEA VEYPQRRYQI LLRSAFGPID VYLVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-231601575PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002983689.11e-124hypothetical protein SELMODRAFT_445661
RefseqXP_002989083.11e-124hypothetical protein SELMODRAFT_229421
SwissprotQ9FV714e-77E2FB_ARATH; Transcription factor E2FB
TrEMBLD8SK881e-124D8SK88_SELML; Putative uncharacterized protein E2F1-1
TrEMBLD8T0B31e-124D8T0B3_SELML; Putative uncharacterized protein E2F1-2
STRINGEFJ098771e-124(Selaginella moellendorffii)
STRINGEFJ151851e-124(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12251749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.32e-78E2F transcription factor 1
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]