PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 118904
Common NameSELMODRAFT_118904
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family bHLH
Protein Properties Length: 90aa    MW: 10344.9 Da    PI: 10.4039
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
118904genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.62e-172167455
            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
             hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k+Lq
  118904 21 VHNLSERRRRDRINEKMRALQELIPNS-----NKTDKASMLDEAIEYLKMLQ 67
            6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-211478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.3931766IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.95E-132071No hitNo description
Gene3DG3DSA:4.10.280.108.2E-202174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-152167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-172372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
AESVDTKKPA TRPKRSRAAE VHNLSERRRR DRINEKMRAL QELIPNSNKT DKASMLDEAI  60
EYLKMLQLQL QVPKIELLHS SHTFSCSCR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12530ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002983759.11e-59hypothetical protein SELMODRAFT_118904, partial
SwissprotO805363e-30PIF3_ARATH; Transcription factor PIF3
TrEMBLD8SK131e-59D8SK13_SELML; Putative uncharacterized protein (Fragment)
STRINGEFJ152553e-59(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-31phytochrome interacting factor 3
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]