PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 114141
Common NamePIF3, SELMODRAFT_114141
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family bHLH
Protein Properties Length: 86aa    MW: 9548.92 Da    PI: 10.7172
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
114141genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.88.4e-182470455
            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
             hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k+Lq
  114141 24 VHNLSERRRRDRINEKMKALQELIPNS-----NKTDKASMLDEAIEYLKMLQ 70
            6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-201777IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-221778IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.4952069IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.14E-142374No hitNo description
PfamPF000102.9E-152470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-182675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
GESVDVKKAP PARTSSKRSR AAEVHNLSER RRRDRINEKM KALQELIPNS NKTDKASMLD  60
EAIEYLKMLQ LQLQVLSPGS SKVSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12833ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002981138.14e-55hypothetical protein SELMODRAFT_114141, partial
SwissprotO805363e-33PIF3_ARATH; Transcription factor PIF3
TrEMBLD8SCD35e-55D8SCD3_SELML; Putative uncharacterized protein PIF3 (Fragment)
STRINGEFJ178391e-54(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-34phytochrome interacting factor 3
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]