PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 105005
Common NameSELMODRAFT_105005
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family LBD
Protein Properties Length: 114aa    MW: 12339.4 Da    PI: 8.7202
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
105005genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260105.44.8e-333104197
  DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
             +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv Gavg++++++++++q+++e++l 
  105005   3 SCNGCRVLRKGCSDSCILRPCLqwiegPEAQGHATVFVAKFFGRAGLMNFISAVPENQRPALFQSLLYEACGRTVNPVFGAVGLLWSGSWHVCQAAVETVLK 104
             6***********************************************************************************************999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.4012108IPR004883Lateral organ boundaries, LOB
PfamPF031956.1E-283102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
RMSCNGCRVL RKGCSDSCIL RPCLQWIEGP EAQGHATVFV AKFFGRAGLM NFISAVPENQ  60
RPALFQSLLY EACGRTVNPV FGAVGLLWSG SWHVCQAAVE TVLKGGSLQA LKQP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002976218.28e-80LOB domain-containing protein 39
RefseqXP_002987125.28e-80LOB domain-containing protein 39
SwissprotQ9SN231e-66LBD38_ARATH; LOB domain-containing protein 38
TrEMBLD8RYR03e-78D8RYR0_SELML; Uncharacterized protein (Fragment)
STRINGEFJ224784e-79(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.15e-69LOB domain-containing protein 38
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]