PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 104980
Common NameSELMODRAFT_104980
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ERF
Protein Properties Length: 327aa    MW: 35779.9 Da    PI: 8.5181
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
104980genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-19131180356
     AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
             ++GVr+++ +g+WvAeIr p++   r+r +lg+f taeeAa a+++a+ kl+ge
  104980 131 FRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFETAEEAAFAYDQAAYKLRGE 180
             8******9.**********955...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.47E-31129189No hitNo description
SMARTSM003801.3E-35130193IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23130188IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-31130188IPR001471AP2/ERF domain
PROSITE profilePS5103222.734130187IPR001471AP2/ERF domain
PRINTSPR003672.3E-10131142IPR001471AP2/ERF domain
PfamPF008476.2E-13131180IPR001471AP2/ERF domain
PRINTSPR003672.3E-10153169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MVDRPRSDNA ISALIDLAAA SSSSIRDGDQ QIPLAQSPAW LLGDRHHHQS TPNYPQILSL  60
GGQIPLINVA SFQQGSIDLT SSIVNPGHNR ENQQQIILNS STGSIEIPAL DKNLVESTSN  120
RSSPVVGTKL FRGVRQRHWG KWVAEIRLPR NRTRLWLGTF ETAEEAAFAY DQAAYKLRGE  180
YARLNFPHLI HHLRSRFSSS SSSSSSSSPS MPSMSIPISR DFSRSPSMLD AKIEALSNRV  240
CFKQRRQQHQ PREIEEMEHM GRAKSEPGPG GVSSAQNGSS SGKGVMDGDH WAEIDESLHK  300
STPIADLTWD VLGGDSSGSS RVPIQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-20129187160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002976369.10.0ethylene-responsive transcription factor ERF057 isoform X1
TrEMBLD8RYT70.0D8RYT7_SELML; Uncharacterized protein
STRINGEFJ226290.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.14e-25related to AP2 4
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]