PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 104978
Common NameSELMODRAFT_104978
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ERF
Protein Properties Length: 185aa    MW: 20369.1 Da    PI: 4.9301
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
104978genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.2e-191968255
     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
             y+GVr+++ +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++l+g
  104978 19 VYRGVRRRS-WGKWVSEIREPKK---KSRIWLGSFPTPEMAARAHDVAALSLKG 68
            69****887.**********854...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-311878IPR001471AP2/ERF domain
PROSITE profilePS5103223.7751976IPR001471AP2/ERF domain
SMARTSM003801.6E-351982IPR001471AP2/ERF domain
PfamPF008478.9E-131968IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-211978IPR016177DNA-binding domain
CDDcd000181.77E-312078No hitNo description
PRINTSPR003673.6E-102031IPR001471AP2/ERF domain
PRINTSPR003673.6E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MEEAKEKPSF GSSGAHHRVY RGVRRRSWGK WVSEIREPKK KSRIWLGSFP TPEMAARAHD  60
VAALSLKGDA ALLNFPESAD SLPRPSALSP KAIQEAAVAA AFAFVDDHTK NEEFQDTSTA  120
STATTVINYV DEDLVFMMPS VMLSHMAQAL LVAPPPMWEG GLSVVEVEVD EEIRLWNFEE  180
LNLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-201476972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024516710.11e-99ethylene-responsive transcription factor TINY
SwissprotQ9LYD32e-44DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLD8RZ291e-131D8RZ29_SELML; Uncharacterized protein
STRINGEFJ226741e-132(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-44ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,B├╝low L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]