PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 101529
Common NameSELMODRAFT_101529
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family C3H
Protein Properties Length: 70aa    MW: 7990.34 Da    PI: 10.8501
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
101529genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH322e-10226226
             -S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
             ++++C+f++++G C++ drC++aH 
   101529  2 DRVNCPFYLKMGACRRRDRCSRAHL 26
             689*********************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.92128IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-7226IPR000571Zinc finger, CCCH-type
PRINTSPR018485.2E-12625IPR009145U2 auxiliary factor small subunit
PRINTSPR018485.2E-122545IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
QDRVNCPFYL KMGACRRRDR CSRAHLKPKQ SCTLLLNNMY QSHPRSGMQK HCHPQGRAPE  60
GLGCVLPRR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002974448.15e-45hypothetical protein SELMODRAFT_101529, partial
SwissprotQ9FMY54e-14U2AFB_ARATH; Splicing factor U2af small subunit B
TrEMBLD8RTF96e-45D8RTF9_SELML; Putative uncharacterized protein (Fragment)
STRINGEFJ246702e-44(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP592666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44785.11e-15C3H family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]