PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00030249-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 235aa    MW: 26203.1 Da    PI: 8.0223
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00030249-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0012132150119
                            EEETTTTEEESSHHHHHHH CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrH 19 
                            ykC++C+k F++   L  H
  SMil_00030249-RA_Salv 132 YKCEKCNKLFKSYQALGGH 150
                            9**********98877655 PP

2zf-C2H212.50.00046181203123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++Cp C+++F +   L  H r+H
  SMil_00030249-RA_Salv 181 HECPFCDRVFASGQALGGHKRSH 203
                            79*****************9999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.0E-5326IPR007087Zinc finger, C2H2
PROSITE profilePS501579.494431IPR007087Zinc finger, C2H2
SMARTSM003550.77426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SMARTSM0035540132152IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.6132159IPR007087Zinc finger, C2H2
PfamPF139124.3E-9132156IPR007087Zinc finger, C2H2
SuperFamilySSF576671.52E-8132203No hitNo description
Gene3DG3DSA:3.30.160.608.3E-4178203IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.9E-11180203IPR007087Zinc finger, C2H2
PROSITE profilePS501579.494181203IPR007087Zinc finger, C2H2
SMARTSM003550.023181203IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280183203IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MERHRCKVCF RNFGDGRALG GHMRSHSMNS SKQVEETHSC SSSRGEVVEN REDGETAPSS  60
RIRAREITNY EERSPLSSVS DTATEEDIAR CLMMLSRDRR ERRNENDDDD DDEDSGHLRK  120
AKGAKVVIRG KYKCEKCNKL FKSYQALGGH RASYNKKIKT DVAARFSSGP AAAAAVEEKV  180
HECPFCDRVF ASGQALGGHK RSHFRGASSV RIISRIGENL DIDLNLPAPV DDGEQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012843926.12e-57PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A022QTF42e-57A0A022QTF4_ERYGU; Uncharacterized protein
STRINGSolyc01g090840.2.12e-51(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-47C2H2-like zinc finger protein