PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00029807-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 499aa    MW: 56181.6 Da    PI: 6.2027
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00029807-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.18.3e-07249270223
                            EETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                             C++Cgk F+r  nL+ H+r H
  SMil_00029807-RA_Salv 249 FCTICGKGFKRDANLRMHMRGH 270
                            6*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.11E-5246273No hitNo description
SMARTSM003550.0026248270IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.03248275IPR007087Zinc finger, C2H2
PfamPF128740.001249270No hitNo description
Gene3DG3DSA:3.30.160.607.4E-6249299IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280250270IPR007087Zinc finger, C2H2
SMARTSM0035558297330IPR015880Zinc finger, C2H2-like
SMARTSM0035522335357IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MDPDERLCAT TWAKSSSGHE SLNTHSNNRS LTDFDRQQQK WEESSFHGYG VRTSDQQFSG  60
FKRPFASNVD SQRQMNDLHG KQIPEAHELD NMQNWDPRAM LNNLSFLENK IHQLQDLVHL  120
VVGRRGQAMS QADEILVQQQ QLITADLTSI IVQLISTAGS LLPSVKNSEN LTSQLGQFSG  180
TASQSAGVLD NVVHNNANKM EDQHDPTGVF EDHDMKSDDD AEEGENLPPG SYEILQLEKE  240
EILAPHTHFC TICGKGFKRD ANLRMHMRGH GDEYKTPAAL AKPHKESSTE PILIKRYSCP  300
YVGCKRNKDH KKFQPLKTIL CVKNHYKRTH CDKNYTCSRC NTKKFSVIAD LKTHEKHCGR  360
DKWLCSCGTT FSRKDKLFGH IALFQGHTPA IPLEGAGPSD QGQSSVEAAN KVEQLDFNYK  420
LDDPRRSVLQ SIMEVEGPGE EDPASYFSPL GFDTSNMAGF QEFPRPLFED TESPFSFLLS  480
ASCDYPPKNE RYAAPNDLE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097108.10.0PREDICTED: LOW QUALITY PROTEIN: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
SwissprotQ9C8N50.0STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLA5BSF50.0A5BSF5_VITVI; Putative uncharacterized protein
STRINGVIT_18s0072g00840.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA47542441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.20.0C2H2 family protein