PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00028977-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 284aa    MW: 31325.6 Da    PI: 6.1287
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00028977-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002298120123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C+ C + Fs++  L  H++ H
  SMil_00028977-RA_Salv  98 FTCSFCRREFSTSQALGGHQNAH 120
                            89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.7E-495124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.63E-695125No hitNo description
PROSITE profilePS5015711.53198125IPR007087Zinc finger, C2H2
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
METLEPCHSE ASNVSVTSEE SPTTQNINKT KKNEEEEEEE YNSKHETATS RVLLDLKLAN  60
HDELMSPSSK LELELLNSPN PSESNNEADP RPPESKTFTC SFCRREFSTS QALGGHQNAH  120
KQERALAKHR HNMVDMTAAG GGAPPPPYGL PGYSYYPYSA FPIHGSFSRP LGIRAESIIQ  180
KPYSYHQTWP PLSFACRISR EKMPRAFLIS PSPSTPYDGM KVENFQPRGS LNLGGNPNPT  240
VTDINACHGA TNKANEGDDN GHQRLKFGGG DQRDASGLDL ELKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086308.13e-80PREDICTED: zinc finger protein 3-like
STRINGSolyc01g005200.1.15e-36(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39672138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.12e-14C2H2 family protein