PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00027002-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family TCP
Protein Properties Length: 267aa    MW: 28767.7 Da    PI: 10.0061
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00027002-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1181.2e-3622128189
                    TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssasec.eaessss 80 
                            a+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+ lt+            a  +  + ++++
  SMil_00027002-RA_Salv  22 ATGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDRLTSCrpslsagA---A--ApRPRNNNN 104
                            589**************************************************************76553321...2..122333333 PP

                    TCP  81 sasnsssg...............k 89 
                            ++sn++sg               +
  SMil_00027002-RA_Salv 105 NNSNNNSGsfmagagagtgadlmN 128
                            333333333444445544444440 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.4E-3323143IPR005333Transcription factor, TCP
PROSITE profilePS5136933.1722583IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MKGAAQGGGE IVQVDGGQIL RATGRKDRHS KVYTAKGPRD RRVRLSAHTA IQFYDVQDRL  60
GYDRPSKAVD WLIKKAKAAI DRLTSCRPSL SAGAAAPRPR NNNNNNSNNN SGSFMAGAGA  120
GTGADLMNTM KSLFPTSSFA GFDNDPCQDS SFQTRDLGLS LQTFQADHHR QENSNIPIHG  180
SFHRIDGWNG GGGGGGGGGG AIFGQGLPFS QRELLQSNAA VNPWNQRPLI SANHHDHDQH  240
QPRGGFELGF RVPARIYGEE EAAENHR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6626113e-52KM662611.1 Ananas bracteatus clone 46469a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100220.12e-85PREDICTED: transcription factor TCP10-like
SwissprotO822772e-48TCP10_ARATH; Transcription factor TCP10
TrEMBLB9SGM05e-64B9SGM0_RICCO; Transcription factor, putative
STRINGPGSC0003DMT4000243284e-56(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66072234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.11e-47TCP domain protein 10