PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00025556-RA_Salv
Common NameWRI5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family AP2
Protein Properties Length: 289aa    MW: 32776.1 Da    PI: 5.9979
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00025556-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2361.8e-1146101255
                    AP2   2 gykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                             ++GV++++++gr++A+++d  ++n  ++k+ + g +  +e Aa+a++ a++k++g
  SMil_00025556-RA_Salv  46 IHRGVTRHRWTGRFEAHLWDkDCWNEsQNKKGRQGAYNDEEAAARAYDLAALKYWG 101
                            68******************99998898877777999998**************98 PP

2AP243.86.3e-14132179656
                    AP2   6 VrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                             r+++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ k++g+
  SMil_00025556-RA_Salv 132 LRRHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAAAYDMAAIKYRGN 179
                            5899*********99966...3.6**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.35E-1445110IPR016177DNA-binding domain
SMARTSM003809.7E-2046115IPR001471AP2/ERF domain
PfamPF008474.7E-846101IPR001471AP2/ERF domain
PROSITE profilePS5103218.09746109IPR001471AP2/ERF domain
PRINTSPR003676.3E-64758IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-1147109IPR001471AP2/ERF domain
PROSITE profilePS5103215.949127186IPR001471AP2/ERF domain
PfamPF008477.3E-10130178IPR001471AP2/ERF domain
SMARTSM003801.1E-20134192IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-15134188IPR016177DNA-binding domain
CDDcd000183.60E-12134188No hitNo description
Gene3DG3DSA:3.30.730.101.7E-15134187IPR001471AP2/ERF domain
PRINTSPR003676.3E-6168188IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MARSSKQKNR PLAAASAAEI SDNDRREGKR KRKSAPRESP QQRSSIHRGV TRHRWTGRFE  60
AHLWDKDCWN ESQNKKGRQG AYNDEEAAAR AYDLAALKYW GQDTTLNFPL PTYQKELQEM  120
EGQSKEEYIS SLRRHHHNGR WEARIGRVFG NKYLYLGTYA TQEEAAAAYD MAAIKYRGNN  180
AVTNFDLSRY INCNMDDNSP IARESPTAAE AEAAASPPLP IGSGGEALGL LLQSSKFKEM  240
MEPNPPRSSF PDDIQTSFDF QDSSTYADEN DIIFSDYDFL SMFQCGLDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12430RREGKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7844560.0KJ784456.1 Salvia miltiorrhiza AP5/EREBP Transcription Factors (WRI5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024448435.11e-123AP2-like ethylene-responsive transcription factor At1g16060
RefseqXP_024452992.11e-123AP2-like ethylene-responsive transcription factor At1g16060
RefseqXP_028051280.11e-123AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
RefseqXP_028051281.11e-123AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN41e-84AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0G2SJH20.0A0A0G2SJH2_SALMI; AP5/EREBP Transcription Factors
STRINGcassava4.1_025233m1e-120(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-79AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]