PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00024088-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 434aa    MW: 48070.2 Da    PI: 10.0391
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00024088-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-05206228223
                            EETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                            +C++Cg+ F  ++ L++H  + H
  SMil_00024088-RA_Salv 206 TCHKCGEQFVKWEALESHHLSkH 228
                            6*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280207228IPR007087Zinc finger, C2H2
SuperFamilySSF563991.06E-20230432No hitNo description
Gene3DG3DSA:3.90.228.105.7E-8250404IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
LSSHVNHFLC NEFTSSSSSS CVPLNFSCIQ QNAEALNTKK EKRMWEKTKK KKEKIPSVWF  60
SLKNSLHCKS DPSDVHDPHP HPRRPEKHLS SILTKKSGRS GCSRSIANLK DVIHGSKRHL  120
DRPPACSPRS IGSSEFLNPI AHEVIFTNSK CDLKITGFHH DPAAAVGNSR PAPQTPTLNT  180
KNPNLSLSQK RAPLERNAAV GGGAATCHKC GEQFVKWEAL ESHHLSKHAV TELVEGDSSR  240
KIVEIICRSS KTESRSVRIE RVLKVHNMHK SLCRFEDYRE MVKMRASKLP KKHPRCLADG  300
NELLRFYGTH AACALGVGSS SLCVSEKCSV CRIIRHGFSS KREFKNGVGV FTTSTSGRAL  360
ESIEEDPSLR KALIVCRVIA GRVHRPLDNV HHIIGQTGFD SLAGKVGLYS NVEELYLLSP  420
KALLPCFVVI CKTT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095310.10.0PREDICTED: uncharacterized protein LOC105174809
TrEMBLA0A151SFE50.0A0A151SFE5_CAJCA; Uncharacterized protein
STRINGPOPTR_0001s44130.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22442235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-153C2H2 family protein