PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00023554-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 172aa    MW: 18793 Da    PI: 9.5308
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00023554-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-1867117255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+GVr+++ +g+++AeIr p +     r +lg++ t+eeAa a+++a+ +l+g
  SMil_00023554-RA_Salv  67 RYRGVRRRP-WGKFAAEIRNPEKK--GSRLWLGTYETPEEAAVAYDRAAFELHG 117
                            8********.**********7443..3*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.33E-2866127No hitNo description
PfamPF008473.9E-1367117IPR001471AP2/ERF domain
SMARTSM003802.4E-3667131IPR001471AP2/ERF domain
PROSITE profilePS5103224.26367125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-3167126IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-2367126IPR016177DNA-binding domain
PRINTSPR003672.7E-106879IPR001471AP2/ERF domain
PRINTSPR003672.7E-1091107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MEAQNRSEFD PAWLQSVQDY LLSDAVDFPI RGGAGSDDAV SLQMIEELLC GDGDSAGAAA  60
AATDWKRYRG VRRRPWGKFA AEIRNPEKKG SRLWLGTYET PEEAAVAYDR AAFELHGSRA  120
RVNFPHLIGS GASEPTRVSK RRRISADRAA SSRCSSSSLT QATSKKIKMA LA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2866131469ATERF1
3gcc_A7e-2866131469ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139143KRRRI
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094418.12e-54ethylene-responsive transcription factor 13-like
SwissprotQ8L9K13e-38ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A4D8Y8064e-63A0A4D8Y806_SALSN; EREBP-like factor
STRINGPGSC0003DMT4000914743e-45(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.16e-38ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]