PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00023553-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 95aa    MW: 10783 Da    PI: 4.6585
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00023553-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.21.1e-145594244
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAak 44
                           +y+GVr+++ +g+++AeIr p++ g  +r +lg++ t+eeAa 
  SMil_00023553-RA_Salv 55 RYRGVRRRP-WGKFAAEIRNPVKKG--ARLWLGTYETPEEAAV 94
                           8********.**********76643..**************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.51E-185495No hitNo description
Gene3DG3DSA:3.30.730.103.7E-205595IPR001471AP2/ERF domain
SMARTSM003802.8E-95595IPR001471AP2/ERF domain
PROSITE profilePS5103219.1775595IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-155595IPR016177DNA-binding domain
PfamPF008479.9E-105593IPR001471AP2/ERF domain
PRINTSPR003671.4E-105667IPR001471AP2/ERF domain
PRINTSPR003671.4E-107995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MTKIDFDFDF NFDFDFDSSP TNPPLINATP INDESDSAGS EEKPQSIAAV TEWKRYRGVR  60
RRPWGKFAAE IRNPVKKGAR LWLGTYETPE EAAVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-175495445ATERF1
3gcc_A3e-175495445ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094418.12e-25ethylene-responsive transcription factor 13-like
SwissprotO803383e-19EF101_ARATH; Ethylene-responsive transcription factor 2
TrEMBLA0A4D8YGD63e-30A0A4D8YGD6_SALSN; Uncharacterized protein
STRINGSolyc01g090310.2.11e-22(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.14e-21ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]