PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00023289-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 371aa    MW: 41103.4 Da    PI: 9.6415
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00023289-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-05150172223
                            EETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                            +Cp Cg++F  ++nL+ H+ + H
  SMil_00023289-RA_Salv 150 SCPQCGQVFMKPENLELHQAVrH 172
                            6******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.058149173IPR007087Zinc finger, C2H2
PROSITE patternPS000280151172IPR007087Zinc finger, C2H2
SuperFamilySSF563993.84E-24175369No hitNo description
Gene3DG3DSA:3.90.228.103.0E-14178367IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MAKSRKQSRE KKKQEEYEKP HSWAAVRSLF TCKYLQVQHQ QHLVHLQEPK PKEITNSSKK  60
MKCSGSLCSN TKVMQKPEII SASPNKKRAA AHLSSSESDA SSRSLIKAAA SPSVRSMPFR  120
KLSGCYECRM VVDPVLGMTR DPSLRATISS CPQCGQVFMK PENLELHQAV RHAVCELGAE  180
DTSKNIVEII FQSSWLKKQA PVCKIERILK VQNTPKTISK FEEYRDIIKG KANPKKQQPR  240
CAADGNELLR FHCTTLMCSL GLNGSSNLCN SIPSCAVCSI IRNGFKLSSR GIFTTATSGK  300
AHDGCRDDGK RAMLVCRVIA GRVNNNSDAN LDDYDSVAGP LGLYSNFDEL YVFNPKAILP  360
CFVVIYTGFS S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012855037.11e-167PREDICTED: uncharacterized protein LOC105974477
TrEMBLA0A022Q5P31e-167A0A022Q5P3_ERYGU; Uncharacterized protein
STRINGVIT_18s0001g03670.t011e-161(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107231517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.15e-99C2H2-like zinc finger protein