PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00022172-RA_Salv
Common NameWRKY56
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 304aa    MW: 34544 Da    PI: 5.0101
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00022172-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.38.8e-30154212259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ve+s +dp +++itY+ eH h+
  SMil_00022172-RA_Salv 154 SDMWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVEQSCTDPGMFIITYTAEHSHS 212
                            79*************************998****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-30139214IPR003657WRKY domain
PROSITE profilePS5081132.409148214IPR003657WRKY domain
SuperFamilySSF1182906.28E-26149214IPR003657WRKY domain
SMARTSM007745.5E-35153213IPR003657WRKY domain
PfamPF031067.4E-25155211IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MSELVSDMAD WSLQAIVRGS SGEFGKMDMD GPDSFLQALT SDHHHQFDQD LRSSFPDIFE  60
GSTGSSGDEL EELYKPFYPA PVSHESLPDH TTLEFQEQEQ NAAEDKPSTH DQSDQSSVTS  120
PVASVTAVYT PKYKKRKNQH KRVVIQVSAE GLTSDMWAWR KYGQKPIKGS PYPRSYYRCS  180
SSKGCLARKQ VEQSCTDPGM FIITYTAEHS HSQPTRRNSL AGTVRQKFPS PKQDKTTENS  240
KSRQQQQQQP ELMDVKPRIK QEEDAKPSDE FDVSDFVFNE DFFSGLEEFD EFAQPFPVRP  300
CSWV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-17145214877Probable WRKY transcription factor 4
2ayd_A2e-17142214274WRKY transcription factor 1
2lex_A2e-17145214877Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231790.0KM823179.1 Salvia miltiorrhiza WRKY protein (WRKY56) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081142.11e-113PREDICTED: probable WRKY transcription factor 29
TrEMBLA0A0D5Y9B80.0A0A0D5Y9B8_SALMI; WRKY protein
STRINGVIT_02s0025g00420.t014e-69(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57812335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.13e-41WRKY family protein