PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00021925-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NAC
Protein Properties Length: 476aa    MW: 53190.4 Da    PI: 7.1302
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00021925-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM116.13.6e-36642061128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 
                            lp+G++F+Ptd+el+ e+L++kvegk+      ++++  +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+++ 
  SMil_00021925-RA_Salv  64 LPAGVKFDPTDQELI-EHLEAKVEGKDskshplIDEFIpTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQt 149
                            799************.99********96665443333333666646**********.555666799******************7333 PP

                    NAM  80 .......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                   + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  SMil_00021925-RA_Salv 150 ecdlqggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 206
                            4555544778************.999***********5547999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-3860225IPR003441NAC domain
PROSITE profilePS5100532.79464225IPR003441NAC domain
PfamPF023651.8E-1665206IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
LQNSGKIYLK KKKDFCAMNK NSQLGSVSSS DLIDAKLEEH QLCGSKQCPG CGHKLEGKPD  60
WVGLPAGVKF DPTDQELIEH LEAKVEGKDS KSHPLIDEFI PTIEGEDGIC YTHPEKLPGV  120
TRDGLSRHFF HRPSKAYTTG TRKRRKIQTE CDLQGGETRW HKTGKTRPVM VNGKQKGCKK  180
ILVLYTNFGK NRKPEKTNWV MHQYHLGQHE EEKEGELVVS KIFYQTQPRQ CNWTERGGAA  240
AAGDDIRRDS GSCSSSKEII PQRDDFSAAA AAVTMAAAAS VPTYTGIDIH HLKADHFGYL  300
PYRKSFDEAA GSIGEASIAR EAAAGTCEER DMGQHHVTHE RDIPQHHVTH EHHHQIAAAA  360
AAATAFHISR PSHSISTIIS PPPLHHTSII LDQDHPFHVP RIMLPNENYQ QHQQQQQQQQ  420
QHHKLGGRSA SGLEELIMGC TSTDIKEESS MANQQEAEWL KYSTFWPDPD NPDHHG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020549346.10.0uncharacterized protein LOC105162027 isoform X2
SwissprotQ9M0F80.0NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A2G9HLT50.0A0A2G9HLT5_9LAMI; Uncharacterized protein
STRINGMigut.K00558.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40572444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-144NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]