PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00021027-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family AP2
Protein Properties Length: 131aa    MW: 15148.2 Da    PI: 10.4471
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00021027-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.38e-0892122336
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkf 36 
                            y+GV+++++ grW A+I  +     +k  +lg+f
  SMil_00021027-RA_Salv  92 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTF 122
                            9***************988532...5*******9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.023155IPR001471AP2/ERF domain
SMARTSM003802.8E-5261IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-8957IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-91257IPR016177DNA-binding domain
SuperFamilySSF541711.57E-690124IPR016177DNA-binding domain
SMARTSM003800.004391130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-591124IPR001471AP2/ERF domain
PROSITE profilePS510329.37491131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MRHVCGIIVA EERDRLGKEG KFTWVRGYDK EDKAARAYDL AALKYWGTTT TTNFPMSNYE  60
KEIEEMKHMT RQEYVASLRR KSSGFSRGAS MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG  120
TFSKIVNPIS T
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001331405.16e-63AINTEGUMENTA-like 5
RefseqXP_022148736.11e-63AP2-like ethylene-responsive transcription factor PLT2, partial
RefseqXP_027121530.16e-63AP2-like ethylene-responsive transcription factor PLT2
SwissprotQ6PQQ34e-62AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A4D9A6I81e-77A0A4D9A6I8_SALSN; AP2-like factor, ANT lineage
STRINGERN117331e-65(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2218822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-64AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]