PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00020886-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NAC
Protein Properties Length: 584aa    MW: 65126.8 Da    PI: 4.3634
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00020886-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.74.1e-31321462106
                    NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk............kvkaeekewyfFskrdkkyatgkrknra 77 
                             pGfrF Ptd el+ +yL+kk++++++ + + ik++++ +v+PwdL+               k +++ewyfF++rd+ky++g+r+ r 
  SMil_00020886-RA_Salv  32 LPGFRFVPTDTELILYYLQKKINNEPILC-DGIKDTNLKQVNPWDLQGsrffvfkillskFPKLGDDEWYFFTPRDRKYPNGERPDRG 118
                            59************************999.88**************945799998877752233889********************* PP

                    NAM  78 tksgyWkatgkdkevlskkgelvglkktL 106
                             +sgyWkatg dk+v++ ++ +vg kk L
  SMil_00020886-RA_Salv 119 SESGYWKATGADKPVIV-GDVTVGFKKAL 146
                            *****************.999******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-3624158IPR003441NAC domain
PROSITE profilePS5100532.00231187IPR003441NAC domain
PfamPF023659.1E-1533146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MDDQETEQRH SEDEQIPAPA APMAVPEWKN YLPGFRFVPT DTELILYYLQ KKINNEPILC  60
DGIKDTNLKQ VNPWDLQGSR FFVFKILLSK FPKLGDDEWY FFTPRDRKYP NGERPDRGSE  120
SGYWKATGAD KPVIVGDVTV GFKKALLDDW VLCRMYEKST RLTNKRKNPN AKEQTDDDWE  180
TAPLENDDDC EIAAAVENLP RIFPENPYPF NYYYHEQNPA YLQDILKQST FAGYQEANPS  240
FSDVYFQLDG IVAPPVEEQG ININSYVNDE PSASGFQQLL PPQPNIASSS TWRSNEASSS  300
YVNDEPSASG CQQPSAQPNI ASSSTWRSNE AFFPASINTN IYPPIYNQID AQQDMKIDAQ  360
ENTSRGIGRY LGHPLRIDGA SAGRDFDTCR RNKAGIQAVN PDDGVVIKEG RKRVLETLHA  420
PVDGAVVDAL VTTVENSFVV SGLGVEKSAA AGTKHDKPAV NDKEVDEDIE METPAGNPAE  480
IVTTAADLES EGNNSQAKSL ALVNAKQAKK LEQANELVAG VTCLFPVFIS YVSMDDGMFG  540
FYCNACRMMM MMMTMMMMCD YDVSQGMQMP VDQAPPKRRG CPPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-303015814168Stress-induced transcription factor NAC1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.27e-33NAC domain containing protein 47