PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00020150-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 504aa    MW: 55261.1 Da    PI: 7.7061
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00020150-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23.1e-05311333223
                            EETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                            +C++Cg++F  +++L++H  + H
  SMil_00020150-RA_Salv 311 TCHKCGEHFAKWETLESHHLSkH 333
                            7*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.162310338IPR007087Zinc finger, C2H2
PROSITE patternPS000280312333IPR007087Zinc finger, C2H2
SuperFamilySSF563995.75E-6410503No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MKSTPNLKSN NRDRIYVVRS LRPTSTGVLR VLPLLDSTHL RCPSLVKRVT PALARPALRS  60
SCAAVLRCCA AQLCCAAQLC CAAQLCCAAL VCAALVWLRS AALFVVHPTL GVERDTVEKI  120
RAGVFRHDHQ RPVHPLYKKE EDERDADDSL VFTKEVPALQ IRAVGCAQSE DEEAAELNPD  180
KKIGQIGLFE VDCEFERCDS RQQTAPRAAP QLQPEIHRSS EFLNPIAHEV ILSNTTCELK  240
ITGFSGAAAA GESGGGSTYV GTLRPGTPGP GGHPTMHYFN PSFRNSTATP PRKEGLPPQK  300
RPSFEKDGGV TCHKCGEHFA KWETLESHHL SKHAEDPSSI RGLQGEREGQ GQQAPQEAPS  360
LPSRWERALE VPRNHASLLP RPKWLLQPLP LGEMQRVLYH QRGILDQEGD QRGVGVFTTS  420
TSGRAFESIE MQDGEEDPCV RKALIVCRVI AGRVHRPLEN IGDIAGQTGF DSLAGKVGLY  480
SNIEELYLLN HKALLPCFVV ICKT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010267825.11e-89PREDICTED: uncharacterized protein LOC104604941
RefseqXP_010267824.11e-89PREDICTED: uncharacterized protein LOC104604941
RefseqXP_010267823.11e-89PREDICTED: uncharacterized protein LOC104604941
TrEMBLA0A022PUI46e-86A0A022PUI4_ERYGU; Uncharacterized protein
STRINGPOPTR_0011s13480.13e-75(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.18e-34C2H2 family protein