PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019746-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 127aa    MW: 13939 Da    PI: 7.4258
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019746-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.5e-055274123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++Cp+C k+F++   L  H r+H
  SMil_00019746-RA_Salv 52 HECPICFKVFPSGQALGGHKRSH 74
                           79*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.0E-8221IPR007087Zinc finger, C2H2
SuperFamilySSF576674.84E-54975No hitNo description
PROSITE profilePS501578.9745274IPR007087Zinc finger, C2H2
PfamPF139121.4E-125275IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MCKKAFQSYQ ALGGHRASHK KFKGCCAPQE TEDSQSQLGE NLMMMMKKSK EHECPICFKV  60
FPSGQALGGH KRSHLIVVDQ AKSSSPPLSR GFLDLNLPAP AEEEEEGCDD FIKPWWIGAG  120
LGLLSTS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072829.13e-41PREDICTED: zinc finger protein ZAT4-like
SwissprotQ9SHD02e-27ZAT4_ARATH; Zinc finger protein ZAT4
TrEMBLA0A022Q8M72e-38A0A022Q8M7_ERYGU; Uncharacterized protein
STRINGSolyc03g115450.1.18e-30(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44812241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.12e-24C2H2-like zinc finger protein