PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019580-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 305aa    MW: 33816.4 Da    PI: 8.3023
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019580-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0014243265223
                            EETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                            +Cp C+ +Fs+   L+ H  + H
  SMil_00019580-RA_Salv 243 VCPQCKLRFSSVGALVDHVEKvH 265
                            6*****************99888 PP

2zf-C2H216.52.3e-05277299223
                            EETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                            +Cp+C+k F+++  L+ H  + H
  SMil_00019580-RA_Salv 277 VCPKCSKGFRDPVKLVEHVEReH 299
                            7*****************99888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.18E-112276No hitNo description
Gene3DG3DSA:4.10.1110.102.4E-112772IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.6872974IPR000058Zinc finger, AN1-type
PfamPF014282.6E-133270IPR000058Zinc finger, AN1-type
SMARTSM001541.1E-43271IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.9E-11109176IPR000058Zinc finger, AN1-type
SuperFamilySSF1183103.01E-9112164No hitNo description
PROSITE profilePS510398.114117170IPR000058Zinc finger, AN1-type
PfamPF014283.0E-8120159IPR000058Zinc finger, AN1-type
SMARTSM001540.021120161IPR000058Zinc finger, AN1-type
SMARTSM003550.065242265IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280244265IPR007087Zinc finger, C2H2
PROSITE profilePS501578.642276304IPR007087Zinc finger, C2H2
SMARTSM003555.5276299IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280278299IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
LFFQSQSRIR GFAFFDLNGM GTPAIPNLGK HCSVDDCRQI DFLPFTCDCC QQVFCLDHRS  60
YSRHQCPKAS KNDVTVVVCP LCAKGVRLIP EEDPNITWES HVNVECDPSN YEQATKKRKC  120
PVPRCKEMLT FSNTIKCRDC NIDHCLKHRF GADHSCPGPR KPEPSFQFMG FLNKSRKDEP  180
KQAAATSSSK WASSFLNLAS SVRASAEAGM TKLSNEFNQA LSTNGGAQNS SSTSTSTSHQ  240
VEVCPQCKLR FSSVGALVDH VEKVHERHGV MKATLDVCPK CSKGFRDPVK LVEHVEREHG  300
GVSKA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075237.11e-172PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ8VZ421e-123SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A022PWX01e-162A0A022PWX0_ERYGU; Uncharacterized protein
STRINGSolyc04g015570.2.11e-148(Solanum lycopersicum)
STRINGPGSC0003DMT4000700441e-148(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53112237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-122C2H2 family protein