PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019381-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 412aa    MW: 45001.4 Da    PI: 9.9015
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019381-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.4e-065981123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C++C+k F r  nL+ H r H
  SMil_00019381-RA_Salv 59 FVCEICNKGFQREQNLQLHRRGH 81
                           89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.78E-55782No hitNo description
Gene3DG3DSA:3.30.160.608.3E-65881IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.0745981IPR007087Zinc finger, C2H2
PfamPF121712.1E-55981IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00345981IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM00355240100130IPR015880Zinc finger, C2H2-like
SMARTSM00355120135155IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MQENNMVESE ILSTESNILN QTKLDEQPVK KKRNLPGMPD PDADVIALSP KTLLATNRFV  60
CEICNKGFQR EQNLQLHRRG HNLPWKLRQR SGKELRKRVY VCPEASCVHH NPSRALGDLT  120
GIKKHFCRKH LDKKYKCHRC PKKYALQSDC KAHIKACGTR EYSCRCGTLF SRRDSFVTHR  180
AFCDALSREN ARSQPPPMVA PLPAWSPPPP PLSPSATVLS IQSSATLELA ENSNAELQPP  240
PPPAPTAAAT TSNNTRSSSG GFLGSMLSSS STYPSLLCSI AGPHQRSVSL SLFEKQQLHY  300
VPRQPAALSA TALLQKAAQM GATSSFLRGL GLALPSSSSI MKLDNTSLGL PSSSSLNELM  360
MSSSTLFRSK PATLDLLGLG VPAAEASSSG GFSAFRDDSE RKYNQSRFCK HD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083713.11e-140PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ9SCQ61e-127IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLA0A0D2TSX81e-135A0A0D2TSX8_G
STRINGVIT_18s0001g12220.t011e-132(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-107indeterminate(ID)-domain 2