PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019047-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 228aa    MW: 25061.8 Da    PI: 7.6851
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019047-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00057395123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           y+C+ C+++Fs+   L  H  +H
  SMil_00019047-RA_Salv 73 YECKTCSRTFSSFQALGGHRASH 95
                           99**********99999998887 PP

2zf-C2H212.40.00046133155123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C++Cg  F +   L  H+r+H
  SMil_00019047-RA_Salv 133 HECSICGSEFASGQALGGHMRRH 155
                            78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.3E-127297IPR007087Zinc finger, C2H2
SuperFamilySSF576674.92E-97295No hitNo description
PROSITE profilePS5015711.01173100IPR007087Zinc finger, C2H2
SMARTSM003550.137395IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
SuperFamilySSF576674.92E-9128155No hitNo description
PfamPF139121.5E-11133157IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.325133160IPR007087Zinc finger, C2H2
SMARTSM003550.031133155IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280135155IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MNTQSLEEFS ASNDHMIVKG KRTKRPRPSS SASSDFNSAT SSSSTEEDED LANCLILLAR  60
GHHRPKATAV YVYECKTCSR TFSSFQALGG HRASHKKPKT AADFDQKRQP PPPPPEEDEF  120
VAITPPPSRP KIHECSICGS EFASGQALGG HMRRHRSAQT TAAAAAAEDS NSSHHDHHHR  180
HVVEKARNML SLDLNLPAPP EEEFRAFSSN QQPQRLVFAA AALVDCHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12327KRPRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089966.16e-72PREDICTED: zinc finger protein ZAT5-like
SwissprotQ681X42e-56ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A022RBE32e-66A0A022RBE3_ERYGU; Uncharacterized protein
STRINGAT2G28200.15e-54(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-37C2H2 family protein