PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00016697-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 460aa    MW: 49112.4 Da    PI: 8.831
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00016697-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-055375123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C++C+k F r  nL+ H r H
  SMil_00016697-RA_Salv 53 FVCEICSKGFQRDQNLQLHRRGH 75
                           89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.23E-65275No hitNo description
Gene3DG3DSA:3.30.160.605.4E-55275IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8875375IPR007087Zinc finger, C2H2
SMARTSM003550.0365375IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
SMARTSM0035525094124IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.7E-4117150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.23E-6124150No hitNo description
SMARTSM0035587129149IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MVEMEISSPT QDGTKSDQTT PPAKRKRNLP GMPDPDSEVI ALSPKTLLAT NRFVCEICSK  60
GFQRDQNLQL HRRGHNLPWK LRQRTSKEVR KRVYVCPETT CVHHEPSRAL GDLTGIKKHF  120
CRKHGEKKYK CDRCSKKYAV HSDCKAHMKT CGSREYRCDC GTLFSRRDSF ITHRAFCDAL  180
AQEISRPQPL VVDDSSGRDL KDGDAEPLPP PSAASSPPQP PLTPSTQVLS PVLSIQSSAG  240
LTENQSIQLQ AAAAAASSSS TSSSRGGVVP ISLNASAPPS YTTFSSPAIS LSLSSLFKSA  300
SQNPPRSHYA QPPALSATAL LQKAAQMGAT SSKSSFLQGL WLSGPTTPSD SQHLESLSLT  360
SPTPNADCSV KLESNSLASG LGLGLPSGGG ASGFTQLMIS PPTTLDFLGL GMPAGEASSD  420
GFSAFFSRLH HMPPPAAPFS PVRAAGDTWD EAQDRKPSML
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074522.11e-160PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ9LVQ71e-124IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLK4BV921e-147K4BV92_SOLLC; Uncharacterized protein
STRINGSolyc04g080130.2.11e-147(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-108indeterminate(ID)-domain 2