PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00016333-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NAC
Protein Properties Length: 297aa    MW: 33662.9 Da    PI: 8.6554
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00016333-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.36.3e-53151421128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            + pGfrFhPtdeelv +yLk+k+++++l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t sg+Wkatg+
  SMil_00016333-RA_Salv  15 MLPGFRFHPTDEELVEFYLKRKLQHRTLPI-ELIKQVDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSTRPNRVTGSGFWKATGT 101
                            579***************************.89***************9888999********************************* PP

                    NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            d++++s+ + + +glkk+Lvfy+gra kg ktdW+mhe+rl
  SMil_00016333-RA_Salv 102 DRPIYSSgGPKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 142
                            ******955566***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-6015171IPR003441NAC domain
PROSITE profilePS5100557.42415171IPR003441NAC domain
PfamPF023659.5E-2617142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDAKNESDRY VDDIMLPGFR FHPTDEELVE FYLKRKLQHR TLPIELIKQV DIYKYDPWDL  60
PKLASTGEKE WYFYCPRDRK YRNSTRPNRV TGSGFWKATG TDRPIYSSGG PKCIGLKKSL  120
VFYRGRAAKG IKTDWMMHEF RLPSSTTAAA GPPPKTLPPT DSWAICRIFK KANSTANRGL  180
SHTWAASLAE TTSPDAFTYT NFTSGNNVND PINFSGNLVF SDNRGTADLT SMFFNQPAAD  240
HQFSGVEEEE GGLRKNVWEN IKSMGFPFSL PPNLPWESPP CPSEMSSTTY STNKCYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-5711741171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098618.11e-145putative NAC domain-containing protein 94
SwissprotQ9ZVH03e-98FEZ_ARATH; Protein FEZ
TrEMBLA0A2G9I4111e-137A0A2G9I411_9LAMI; Uncharacterized protein
STRINGMigut.H00918.1.p1e-129(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22022262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.16e-97NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]