PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00015954-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NAC
Protein Properties Length: 192aa    MW: 22100.6 Da    PI: 5.2829
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00015954-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM117.11.8e-3681271128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            +ppGfrF Ptdeelvv++L++k++  +++  +vi+++d+y ++PwdL+ k+  e ++wyf+s+r +       ++r+  sgyW+  g 
  SMil_00015954-RA_Salv   8 MPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLDLYPYDPWDLHGKAMCEGNKWYFYSRRTT-------QSRVGGSGYWQPIGV 87 
                            79*************************999.99**************977677899******9865.......679999********* PP

                    NAM  89 dkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                            +++++s +g+ vg+kk  +fy g + ++g+kt+W+mheyrl
  SMil_00015954-RA_Salv  88 EEAIYS-GGQRVGMKKCNAFYVGqQPSQGVKTNWIMHEYRL 127
                            ******.99************88355689**********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-495157IPR003441NAC domain
PROSITE profilePS5100545.3078158IPR003441NAC domain
PfamPF023652.6E-229127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGDNNLNMPP GFRFYPTDEE LVVHFLHRKA ALLPCHPDVI PDLDLYPYDP WDLHGKAMCE  60
GNKWYFYSRR TTQSRVGGSG YWQPIGVEEA IYSGGQRVGM KKCNAFYVGQ QPSQGVKTNW  120
IMHEYRLSDS TSSNRSSSRR RSSKIDYSKW VVCRVYERNC DSDDDDGTQL SCLDEVFLSL  180
DDLDEISLPN YS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-45416213169NO APICAL MERISTEM PROTEIN
1ut4_B2e-45416213169NO APICAL MERISTEM PROTEIN
1ut7_A2e-45416213169NO APICAL MERISTEM PROTEIN
1ut7_B2e-45416213169NO APICAL MERISTEM PROTEIN
3swm_A3e-45416216172NAC domain-containing protein 19
3swm_B3e-45416216172NAC domain-containing protein 19
3swm_C3e-45416216172NAC domain-containing protein 19
3swm_D3e-45416216172NAC domain-containing protein 19
3swp_A3e-45416216172NAC domain-containing protein 19
3swp_B3e-45416216172NAC domain-containing protein 19
3swp_C3e-45416216172NAC domain-containing protein 19
3swp_D3e-45416216172NAC domain-containing protein 19
4dul_A2e-45416213169NAC domain-containing protein 19
4dul_B2e-45416213169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027106335.11e-101NAC domain-containing protein 104-like
RefseqXP_027159802.11e-101NAC domain-containing protein 104
SwissprotQ8GWK69e-79NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A068TMB61e-100A0A068TMB6_COFCA; Uncharacterized protein
STRINGXP_009622295.17e-97(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37662447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.14e-66xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]