PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00015854-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NAC
Protein Properties Length: 280aa    MW: 31599.4 Da    PI: 9.3316
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00015854-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.23.5e-32531941128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra. 77 
                            lp+G++F+P+d+e++ ++L++kv ++       ++  e+i+++d    i++++P++Lp  v++e +  +fF++ +k+y+tg+rk+r+ 
  SMil_00015854-RA_Salv  53 LPAGVKFDPSDQEIL-QHLEAKVYSDAkklhplID--EFIPTIDgengICYTHPQKLP-GVSKEGQVRHFFHRPSKAYTTGTRKRRKv 136
                            799***********9.99****9888856643322..23444444445**********.556667888******************74 PP

                    NAM  78 ........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                      + +W++tgk+++v      + g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  SMil_00015854-RA_Salv 137 htddddggGGETRWHKTGKTRAVSG---DVRGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 194
                            6555554433778*********976...789*********66589**************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-3647213IPR003441NAC domain
PROSITE profilePS5100532.41653213IPR003441NAC domain
PfamPF023658.6E-1554194IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MTWSNNNNDA LQIKQNYTVS KPDQLRTIIC PSCGHTVKLQ DQYQSGVQDL PGLPAGVKFD  60
PSDQEILQHL EAKVYSDAKK LHPLIDEFIP TIDGENGICY THPQKLPGVS KEGQVRHFFH  120
RPSKAYTTGT RKRRKVHTDD DDGGGGETRW HKTGKTRAVS GDVRGYKKIL VLYTNYGRQR  180
KPEKTNWVMH QYHLGHNQDE KDGELVLSKV FYQTQPRQCA TKPTNADQSS FMSKNQSFVV  240
DYYNPYSNAD APPHLIPNLL LHGDGSSSFL HVPSAATKPK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096365.11e-142NAC domain-containing protein 73
SwissprotO494591e-111NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A4D8ZZP41e-161A0A4D8ZZP4_SALSN; Uncharacterized protein
STRINGXP_002509421.11e-135(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28752454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.11e-111NAC domain containing protein 10
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]